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6 Moab+Slurm

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This section lists some typical and important Moab+Slurm directives accepted or unadvised. For a general overview of Maob+Slurm, please visit http://www.clusterresources.com/products/mwm/docs/index.shtml

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6.1 Moab+slurm Commands

mnsubmit <jobscript>

Submit the job script file

mnq

Display all your queued jobs

checkjob <job_id>

Verbose display of job <job_id>

mncancel <job_id>

Delete a job

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6.2 Moab Directives

Moab Directives

# @  job_name = <name of the job>

Sets the name of the job.

# @ output = <output file>

Sets the file where stdout will be fetched.

# @ error = <error file>

Idem than output but with stderr.

# @ total_tasks = <number of tasks>

Sets number of tasks.

# @ tasks_per_node = <number of cores>

Sets number of tasks within each node.

# @ wall_clock_limit = <HH:MM:SS>

Sets the maximum execution time in hours, minutes and seconds

 
6.3 BSC: MN specifics

6.3 BSC: MN specifics

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This section describes some Moab+Slurm Directives particular to MareNostrum at BSC. For more information, please visit the corresponding documentation at BSC.

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6.4.1 Example MPI script

# @ job_name = MyJob
# @ initialdir = .
# @ output = MyModel/output.%j.out
# @ error = MyModel/output.%j.err
# @ total_tasks = 128
# @ cpus_per_task = 4
# @ tasks_per_node = 1
# @ wall_clock_time = 06:00:00

module load deisa cpmd
cd $DEISA_SCRATCH
cp $DEISA_HOME/MyModel/CPMD/* .
srun $CPMD input.in > cpmd.out
cp * $DEISA_HOME/MyModel/CPMD
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